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Sheng-Song Xie

Sheng-Song Xie

Ph.D.
Updated: February, 2016
 

Personal data
Date of Birth: October, 1982
Nationality: Chinese
Office Address: College of Veterinary Medicine Huazhong Agricultural University Wuhan, HUBEI, 430070 P.R.China
Telephone: 086-18202734228
Email:ssxie@mail.hzau.edu.cn

Education:
2009.9----2013.4: Ph.D. , Biochemistry and Molecular Biology Institute of Biochemistry and Cell Biology, SIBS, CAS, Shanghai, P. R. China Supervisor: Professor and academician Yonglian ZHANG
2006.9----2009.6: MS, Animal Genetics, Breeding and Reproduction Science Huazhong Agricultural University, Wuhan, P. R. China Supervisor: Professor Shuhong Zhao
2002.9----2006.6: BS, Animal Science Huazhong Agricultural University, Wuhan, P. R. China

Employment
2014.12----now :Associate Research Fellow, Department of Animal Physiology and Biochemistry, College of veterinary medicine, Huazhong Agricultural University, Wuhan, P. R. of China
2013.4----2014.11 :Assistant Research Fellow, Institute of Biochemistry and Cell Biology, SIBS, CAS, Shanghai, P. R. of China

Teaching experience:
For undergraduate students:
Animal Physiology

Experiment of Molecular Biology:
Experimental of Genome editing (Innovation experiment course)
Professional Practice Course of Animal Science

Research experience:
Small noncoding RNAs (ncRNAs) are a novel class of gene regulators that modulate gene expression at transcriptional, post-transcriptional, and epigenetic levels, and they play crucial roles in almost all cellular processes in eukaryotes. My research interests focus on two related areas. The first one is focuses on male reproduction biology specifically in the field of epididymis, a subject which I initially explored the roles of small ncRNAs in the epididymis. I continue to be interested in the spermatogenesis and sexual differentiation; I was also interested in develop new bioinformatics tools for miRNA and genome editing techniques, such as sRNAPrimer, sgRNAcas9 and CRISPR-offinder.

Publications
1. Shengsong X, Yi Z, Lisheng Z, Guanglei L, Changzhi Z, Pan N, Shuhong Z. sgRNA design for the CRISPR/Cas9 system and evaluation of its off-target effects. HEREDITAS(Beijing), 2015, 37(11): 1125-1136.
2. Changzhi Z, Yi Z, Guanglei L, Jiliang C, JingJin L, Ruimin R, Pan N, Shuhong Z, Shengsong X. Development of a graphical user interface for sgRNAcas9 and its application. HEREDITAS(Beijing), 2015, 37(10): 1061-1072.
3. Chu C, Zheng G, Hu S, Zhang J, Xie S, Ma W, Ni M, Tang C, Zhou L, Zhou Y, Liu M, Li Y, Zhang Y. Epididymal Region-Specific miRNA Expression and DNA Methylation and Their Roles in Controlling Gene Expression in Rats. PLoS One. 2015, 10(4):e0124450.
4. Xie S, Shen B, Zhang C, Huang X, Zhang Y. sgRNAcas9: a software package for designing CRISPR sgRNA and evaluating potential off-target cleavage sites. PLoS One. 2014, 9(6):e100448.
5. Ma W, Hu S, Yao G, Xie S, NiM, Liu Q, Gao X, Zhang J, Huang X, Zhang Y. An androgen receptor-microrna-29a regulatory circuitry in mouse epididymis. J Biol Chem. 2013, 288(41):29369-81.
6. Xie S, Xu J, Ma W, Liu Q,Han J, Yao G, Huang X, Zhang Y. Lcn5 promoter directs the region-specific expression of cre recombinase in caput epididymidis of transgenic mice. Biol Reprod. 2013, 88(3):71.
7. Zhang J, Xie S, Ma W, TengY, Tian Y, Huang X, Zhang Y. A newly identified microRNA, mmu-miR-7578, functions as a negative regulator on inflammatory cytokines tumor necrosis factor-α and interleukin-6 via targeting Egr1 in vivo. J Biol Chem. 2013, 288(6):4310-20.
8. Sun N, Liu D, Chen H, Liu X, Meng F, Zhang X, Chen H, Xie S, Li X, Wu Z. Localization, expression change in PRRSV infection and association analysis of the porcine TAP1 gene. Int J Biol Sci. 2012, 8(1):49-58.
9. Ma W, Xie S, Ni M, Huang X, Hu S, Liu Q, Liu A, Zhang J, Zhang Y. MicroRNA-29a inhibited epididymal epithelial cell proliferation by targeting nuclear autoantigenic sperm protein (NASP). J Biol Chem. 2012, 287(13):10189-99.
10. Xie SS, Li XY, LiuT, Cao JH, Zhong Q, Zhao SH. Discovery of porcine microRNAs in multiple tissues by a Solexa deep sequencing approach. PLoS One. 2011, 6(1):e16235.
11. Xie SS, Huang TH, Shen Y, Li XY, Zhang XX, Zhu MJ, Qin HY, Zhao SH. Identification and characterization of microRNAs from porcine skeletal muscle. Anim Genet. 2010, 41(2):179-90.

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